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Algorithm Research & Explore
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425-430

Edge perturbation-based link prediction interpretation

Chen Gengjing1
Guo Gongde1
Lin Shishui2
1. College of Computer & Cyber Security, Fujian Normal University, Fuzhou 350117, China
2. Dept. of Orthopedic Surgery, Shengli Clinical Medical College of Fujian Medical University, Fuzhou University Affiliated Provincial Hospital, Fuzhou 350001, China

Abstract

Most link prediction models are black-box models with poor interpretability. Many scholars have proposed interpretability methods for link prediction. However, these methods often have limitations such as being tailored to a single target model, lacking generalizability, and having insufficient accuracy in the interpretation results. To address these shortcomings, this paper proposed a link prediction interpretation method based on edge perturbation. Firstly, the method used breadth-first search to obtain all paths from the head entity to the tail entity and then search for the neighboring nodes of the entities in these paths to form a training subgraph for the target triplet. Then, the method applied edge perturbation to the subgraph and retrained the embedding model to calculate the influence of each edge on the prediction result. Finally, bidirectional beam search identified the path with the greatest influence on the prediction result, which served as the explanation path for the target triplet. Experiments show that the proposed method outperforms most link prediction interpretation methods on public datasets, improving accuracy(ACC) by 2.3% and area under the precision-recall curve(AUPR) by 1.9% compared to the state-of-the-art methods. Additionally, interpretation experiments on biomedical datasets for the task of drug repurposing using link prediction techniques demonstrate good understandability and inspiration. The main contribution of this paper is the proposal of an effective interpretation method that does not depend on a specific model, which obtains the interpretation paths through edge perturbation and path search, making the interpretation of the results more intuitive and easier to understand, while providing support for knowledge graph applications in different domains.

Foundation Support

福建省自然科学基金资助项目(2022J01398)

Publish Information

DOI: 10.19734/j.issn.1001-3695.2024.07.0287
Publish at: Application Research of Computers Printed Article, Vol. 42, 2025 No. 2
Section: Algorithm Research & Explore
Pages: 425-430
Serial Number: 1001-3695(2025)02-014-0425-06

Publish History

[2025-02-05] Printed Article

Cite This Article

陈耿靖, 郭躬德, 林世水. 基于边扰动的链接预测解释方法 [J]. 计算机应用研究, 2025, 42 (2): 425-430. (Chen Gengjing, Guo Gongde, Lin Shishui. Edge perturbation-based link prediction interpretation [J]. Application Research of Computers, 2025, 42 (2): 425-430. )

About the Journal

  • Application Research of Computers Monthly Journal
  • Journal ID ISSN 1001-3695
    CN  51-1196/TP

Application Research of Computers, founded in 1984, is an academic journal of computing technology sponsored by Sichuan Institute of Computer Sciences under the Science and Technology Department of Sichuan Province.

Aiming at the urgently needed cutting-edge technology in this discipline, Application Research of Computers reflects the mainstream technology, hot technology and the latest development trend of computer application research at home and abroad in a timely manner. The main contents of the journal include high-level academic papers in this discipline, the latest scientific research results and major application results. The contents of the columns involve new theories of computer discipline, basic computer theory, algorithm theory research, algorithm design and analysis, blockchain technology, system software and software engineering technology, pattern recognition and artificial intelligence, architecture, advanced computing, parallel processing, database technology, computer network and communication technology, information security technology, computer image graphics and its latest hot application technology.

Application Research of Computers has many high-level readers and authors, and its readers are mainly senior and middle-level researchers and engineers engaged in the field of computer science, as well as teachers and students majoring in computer science and related majors in colleges and universities. Over the years, the total citation frequency and Web download rate of Application Research of Computers have been ranked among the top of similar academic journals in this discipline, and the academic papers published are highly popular among the readers for their novelty, academics, foresight, orientation and practicality.


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